Speakers

Aaron Brooks

Aaron Brooks

Measuring transcriptomic diversity induced by genome SCRaMbLEing with nanopore direct RNA sequencing

Ahmed Abd El Wahed

Ahmed Abd El Wahed

From ancient tomb to animal viruses: mobile suitcase lab for nanopore sequencing at field setting

Amanda Warr

Amanda Warr

Going full circle: Assembly of high-quality, single-contig microbial genomes from the rumen microbiome using long-read sequencing

Anderson O. Oaikhena

Anderson O. Oaikhena

The phyllosphere of Euphorbia lateriflora and Ficus thonningii

Andrea Riposati

Andrea Riposati

Human long-read whole genome sequencing: applications and results

Anna Dolnik

Anna Dolnik

Genomic profiling in acute myeloid leukemia with complex karyotype

Anna Schuh

Application of nanopore sequencing in clinical haematology

Anne-Lise Ducluzeau

Anne-Lise Ducluzeau

Building experiential learning about DNA sequencing through algae bloom monitoring onboard R/V Sikuliaq

Arwyn Edwards

Arwyn Edwards

MinION sequencing from the extreme to the everyday

lightning

Charles C. Kayuki

Portable DNA sequencing in remote East African farms

Cherly Ames

Cheryl L. Ames

Field-forward sequencing with Oxford Nanopore technology: a strategy to establish the upside-down mangrove jellyfish Cassiopea xamachana as a bioindicator

Chris T L Chan

Chris T. L. Chan

Long-read NGS guided preimplantation genetic testing for chromosomal structural rearrangement

Christopher Oakes

Discerning the origin of Epstein-Barr virus in patients using nanopore-derived DNA methylation signatures

Christopher Watson

Christopher Watson

Clinical application of long-read sequencing

Clive G. Brown

Update from Oxford Nanopore Technologies

Dan Turner

The real Simon Pure

Daniel Depledge

Daniel P. Depledge

Redefining the transcriptional complexity of viral pathogens using direct RNA sequencing

David Greig

David R. Greig

Comparison of single nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga Toxin producing E.coli

lightning

Devin Drown

Rapid genomic discovery using VolTRAX library preparation and nanopore sequencing

Dr. Mengchu Wu

Dr. Mengchu Wu

Health GeneTech

Emma Langan

Emma Langan

Ship-Seq: nanopore sequencing of polar microbes onboard research vessels

Eoghan Harrington

Eoghan Harrington

Pore-C: a method for genome-wide, multi-contact chromosome conformation capture

Ernesto Picardi

Ernesto Picardi

C-to-U RNA editing signals revealed by nanopore direct RNAseq

Eva Maria Novoa

Eva Maria Novoa

Accurate detection of m6A RNA modifications in native RNA sequences using third-generation sequencing

Evangelos Karousis

Splice isoform-specific analysis of endogenous NMD targets in human cells

Ewan Birney

Ewan Birney

Compressing Oxford Nanopore signal into CRAM

F. Veronica Greco

F. Veronica Greco

Efficient reading of DNA-encoded cellular memories using nanopore sequencing

Frederic Delsuc

Frédéric Delsuc

Genomics from roadkill - high quality mammalian genomes using hybrid assembly with MinION long reads

George Busby

George Busby

University of Oxford

Harmeet Singh Chawla

Harmeet Singh Chawla

Long reads reveal small scale genome structural variations in Brassica napus

Heather Drexler

Heather Drexler

Direct sequencing of nascent RNA exposes splicing kinetics and order

Irina Chelysheva

Irina Chelysheva

Small, modified and highly structured: the challenge of tRNA sequencing

James Ferguson

James Ferguson

SquiggleKit: a toolkit for manipulating nanopore signal data

Jason Hendry

Jason Hendry

Mobile Malaria Project

Jeff Nivala

Multiplexed direct quantification of barcoded protein reporters on a MinION

Jeroen de Ridder

Jeroen de Ridder

Cyclomics: ultra-sensitive nanopore sequencing of cell free tumor DNA

John Davey

John Davey

Tapestry: assessing small eukaryotic genome assemblies with long-reads

John Tyson

John Tyson

University of British Columbia

Josh Quick

Joshua Quick

The Three Peaks Challenge and developing extraction methods suitable for long-read, ultra-deep stool metagenomics on the PromethION

Jungwoo Lee

Jungwoo Lee

Transcriptome profiling of colon cancer by nanopore sequencing

Karen James

Karen James

MinION for barcoding and metabarcoding in polar environments

Karen Miga

Karen Miga

Telomere-to-telomere assembly of a complete human X chromosome

Karim Rahimi

Karim Rahimi

Nanopore sequencing of full-length circRNAs in human and mouse brains reveals circRNA specific exon usage and intron retention

lightning

Katie Doroschak

Molecular tagging with nanopore-orthogonal DNA strands

Kevin Lebrigand

Kevin Lebrigand

Single cell isoform profiling, 10xGenomics scRNA-seq and nanopore long read sequencing

Kimmo Palin

Kimmo Palin

Retrotransposon variation in human genome and tumorigenesis

Kuan Ting Lin

Kuan-Ting Lin

PSI-Sigma: a comprehensive splicing-detection method for short-read and long-read RNA-seq analysis

Li-Hsin Chang

Li-Hsin Chang

Nano-C: targeted poly-contact chromatin interactions for comprehensive profiling of cell-to-cell variation of 3D genome organization

Lucky Ronald Runtuwene

Lucky Ronald Runtuwene

An international collaborative effort for infectious disease analyses using MinION

Magali Hennion

Magali Hennion

Mapping DNA replication using nanopore sequencing

Mahesh Dharne

Mahesh Dharne

Metagenomics of India's largest River Ganges confluence at Prayagraj, India using MinION sequencing

Margaret Fleming

Margaret Fleming

Using full-length transcript sequencing to reveal the fate of mRNA in aging seeds

Marie Christine Capentier

Marie-Christine Carpentier

Using long-read nanopore sequencing to unravel structural genomic variations in plants

Mark Ebbert

Mark T. W. Ebbert

Long-read sequencing technologies resolve most dark and camouflaged gene regions

Martin Frith

Martin Frith

Finding disease-causing complex mutations

Martin Smith

Martin Smith

Dissecting RNA biology, one molecule at a time

Martin Smith

Martin Smith

Leveraging long reads for high-throughput multiomic analyses of cellular diversity in human tumours

Massimiliano Clamer

Massimiliano Clamer

Direct nanopore sequencing of ribosome protected mRNA fragments

Matt Loose

Matt Loose

University of Nottingham

Max Schmidt

Maximilian Schmidt

Plant de novo genome sequencing and assembly using Oxford Nanopore Technology

Michael Boemo

Michael Boemo

Untangling heterogeneity in DNA replication with nanopore sequencing

Mike Clark

Mike Clark

Deep transcriptomic sampling with long-read single cell RNA sequencing

Mike Vella

Mike Vella

Accelerated de novo assembly on GPUs

Milad Miladi

Milad Miladi

It is all about accessibility: Galaxy as a framework for democratizing Oxford Nanopore data analysis

Min Sung Park

Min Sung Park

Identification of new somatic structural variants and cancer driver genes using long-read nanopore sequencing

Miten Jain

Miten Jain

Generating high-quality reference human genomes using PromethION nanopore sequencing

Mohamad Sater

Mohamad Sater

Multi-copy qnrA1 plasmid causes elevated quinolone resistance in E. coli

Mollie Schubert

Mollie Schubert

Characterizing large homology directed repair (HDR) insertions by CRISPR/Cas9 using MinION long-read sequencing technology

Monica Kehoe

Monica Kehoe

Nanopore sequencing and analysis of plant pathogenic viruses: more than just rapid diagnostics?

My Linh Thibodeau

My Linh Thibodeau

Resolution of germline hereditary cancer structural variants using nanopore sequencing

Nadine Holmes

Nadine Holmes

Extracting megabase DNA

Natalie Ring

Natalie Ring

Ultra-long reads and ultra-long duplications: deciphering the mysteries of the Bordetella pertussis genome

Ned Peel

Ned Peel

Semi-quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

Nicholas Gleadall

Nicholas Gleadall

Blood donor genotyping - how can long range sequencing help?

Nick Loman

Nick Loman

University of Birmingham

Nicola Hall

Revealing mRNA alternative splicing complexity in the human brain

Pay Giesselmann

Pay Giesselmann

Nanopype: processing and quantification of short tandem repeats

Rachael Tarlinton

Rachael Tarlinton

Retroviral invasion of the koala genome

Rachel Goldfeder

Rachel Goldfeder

Nanopore direct RNA sequencing enables comprehensive transcriptome profiling and modification detection

Rebecca Prescott

Rebecca D. Prescott

‘O nā Hōkū nō nā Kiu o ka Lani: Bridging genomics research and culture-based science education through astrobiology in Hawaiʻi

Rebecca Richards

Rebecca Richards

Biological evidence of the future: the use of sequencing in forensic DNA analysis

Rich Carter

Rich Carter

Don’t let data management be your bottleneck

Rob James

Rob James

From amplicons to metagenomes: Long read sequencing the environment

Sam Kovaka

Sam Kovaka

Rapidly mapping raw nanopore signal with UNCALLED to enable real-time targeted sequencing

Samuel O'Donnell

Samuel O'Donnell

Structural diversity in the budding yeast

lightning

Sara D'Andreano

MinION application: performing long fragment analysis on pure fungal cultures (3.5 kb and 6 Kb) and genome analysis of Malassezia pachydermatis

Sarah Wallace

Sarah Wallace

Nanopore sequencing in space: one small step for a MinION, one giant leap for spaceflight research

Severine Rangama

Séverine Rangama

Long-read sequencing and assembly of a large environmental blaCTX-M-15 harbouring plasmid

shaili Johri

Shaili Johri

Unraveling shark secrets: sequencing genomes and microbiomes for research and conservation

lightning

Sílvia Carbonell Sala

High-throughput annotation of full-length long noncoding RNAs using CapTrap-CLS

Sophie Colston

Field forward sequencing in naval environments

Stella Loke

Stella Loke

Obtaining high quality DNA from plant tissues for nanopore sequencing

Stephen Pascoe

Stephen Pascoe

Don’t let data management be your bottleneck

Stephen Rudd

Stephen Rudd

Applied bioinformatics: from basic QC to Epi2ME

lightning

Susan Engelbrecht

Looking for a needle in a haystack: nanopore sequencing of a new Simian immunodeficiency virus (SIV) from a chacma baboon (Papio ursinus)

Timothy Gilpatrick

Timothy Gilpatrick

Targeted nanopore sequencing with Cas9 for studies of methylation, structural variants and mutations

Tong Zhang

Tong Zhang

Mobile antibiotic resistome in wastewater treatment plants revealed by nanopore metagenomic sequencing

Valentina Dona

Valentina Dona

Complete genomes of eighteen different Actinobacillus pleuropneumoniae reference serotypes assembled with Oxford Nanopore reads

Yue Wan

Yue Wan

Using direct RNA sequencing to detect RNA structures in transcriptomes

Yusmiati Liau

Yusmiati Liau

Nanopore sequencing of the CYP2D6 pharmacogene

lightning

Yutaka Suzuki

Identification of a new class of local copy number aberrations in lung cancer genomes using PromethION