Speakers

Lightning talk

Markus Haak

Detection of Unnatural Bases Using Raw Nanopore Sequencing Data

Luke Meredith

Luke Meredith

Assessing the prevalence and sequence diversity of Hepatitis B Virus in Sierra Leone with MinION

Lukasz Krych

Lukasz Krych

Bacterial species level identification and strain level differentiation using repetitive extragenic palindromic based amplicon sequencing with Oxford Nanopore Technology

Carika Weldon

Polling panel speaker

Carika Weldon

Timothy Gilpatrick

Timothy Gilpatrick

Cas9 targeted enrichment for nanopore profiling of methylation at known cancer drivers

Laura Boykin, Joseph Ndunguru &Titus Alicai

Laura Boykin, Joseph Ndunguru & Titus Alicai

Cassava Virus Action Project

Lachlan Coin

Lachlan Coin

Chiron basecaller

Cecilia Yeung with Olga Sala-Torra

Cecilia Yeung with Olga Sala-Torra

Clinical applications for real-time sequencing in leukaemia

Clive Brown

Oxford Nanopore Technical Update

Clive Brown: Plenary from London Calling 2018

Alba Sanchis-Juan

Alba Sanchis-Juan

Complex structural variants resolved by short-read and long-read whole genome sequencing in Mendelian disorders

Quentin Carradec

Quentin Carradec

Coral holobionte species identification onboard Tara with MinION sequencing of multiple barcodes.

Jean-Marc Aury

Jean-Marc Aury

De novo sequencing and assembly of plant genomes using nanopore long reads

Kai Wang

Kai Wang

Detecting DNA modifications and structural variants from nanopore long-read sequencing data

Adam Burns

Adam Burns

Detection of clinically relevant molecular alterations in CLL by nanopore sequencing

Christos Proukakis

Christos Proukakis

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

Blake Hanson

Blake Hanson

Determining novel antimicrobial resistance mechanisms with Oxford Nanopore long-read sequencing data

Devon O'Rourke

Polling Panel Plenary

Devon O'Rourke

Miranda Pitt

Miranda Pitt

Evaluating the extensively drug-resistant Klebsiella pneumoniae resistome via MinION direct RNA sequencing

Amy Gargis

Amy Gargis

Evaluation of nanopore sequencing for bacterial biothreat pathogens

Danny Miller

Danny Miller

Genome assembly in Drosophila using nanopore

Alex Dainis

Alex Dainis

Haplotyping of key cardiac disease genes using long-read sequencing

Lightning talk

Jennifer Idol

High Coverage, Ultra-long Read Sequencing

Aleida Homme de Vos van Steenwijk

Aleida Homme de Vos van Steenwijk

How MinION sequencing is helping us solve real-life environmental biotechnology issues

Lightning talk

Wouter De Coster

Human genome sequencing on PromethION

Arne De Roeck

Arne De Roeck

Human genome sequencing on PromethION to investigate tandem repeats in dementia

Chris Vollmers

Chris Vollmers

Improving MinION read accuracy to enable the high-throughput analysis of single cell transcriptomes.

Lightning talk

Natacha Couto

Insights into vancomycin-resistant enterococci outbreaks through short- and long-read sequencing

Matthew Links

Matthew Links

Interactive exploration of base calls in nanopore data

Jennifer Gardy

Polling panel speaker

Jennifer Gardy

Richard Finkers

Richard Finkers

Know your onion - the impact of long reads on large genomes

Antony Bolger

Antony Bolger

LOGAN: Lossless graph-based analysis of NGS datasets

Niranjan Nagarajan

Niranjan Nagarajan

Making infection control in hospitals smarter using nanopore sequencing

Jeroen de Ridder

Jeroen de Ridder

Mapping multi-contact chromatin interactions on the MinION

Matt Loose

Polling Panel Plenary

Matt Loose

Nathan Roach

Nathan Roach

Measuring the transcriptome of the C. elegans lifecycle using direct RNA sequencing

Liana Kafetzopoulou

Liana Kafetzopoulou

Metagenomic nanopore sequencing: RNA viruses from lab to field

Reindert Nijland

Reindert Nijland

MinION in the marine environment: from identifying tetrodotoxin producers to tracing sharks and rays using eDNA

Peter Meister

Peter Meister

Multi-contact chromosome conformation capture using nanopore sequencing in nematodes

Graham Taylor

Graham Taylor

Nanopore sequencing in clinical diagnostics

Guillaume Croville

Guillaume Croville

Nanopore sequencing in veterinary virology: from clinical sample to whole genome

Wigard Kloosterman

Wigard Kloosterman

Nanopore sequencing of cancer genomes

Lightning talk

Olga Francino

Nanopore sequencing of full-length 16S rRNA gene in low-biomass samples: subclinical mastitis in water buffalo

Lightning talk

Stefanos Siozios

Nanopore sequencing permits de novo assembly of repetitive microbial genomes

Lightning talk

Kai Sohn

Nanopore sequencing-based diagnostics of bacteremia in septic patients

Jose Espejo Valle-Inclan

Jose Espejo Valle-Inclan

NanoSV

Angela Brooks

Angela Brooks (Nanopore RNA Consortium)

Native RNA sequencing of human polyadenylated transcripts

Carl-Johan Rubin

Carl-Johan Rubin

On-site nanopore sequencing of Darwin's finch genomes in the Galapagos

Lightning talk

Yutaka Suzuki

Phasing regulatory SNVs to their regulating transcript regions in cancers by using MinION

Bruce Walker

Bruce Walker

Pilon

Simon Grandjean Lapierre & Niaina Rakotosamimanana

Simon Grandjean Lapierre & Niaina Rakotosamimanana

Point of care Mycobacterium tuberculosis whole genome sequencing in remote rural Madagascar

Alexander Wittenberg

Alexander Wittenberg

PromethION sequencing of complex plant genomes

Andreas Hauser

Andreas Hauser

PromethION: an alpha machine in production

Helmut Blum

Helmut Blum

PromethION: Unleash the power of nanopore sequencing

Jangsup Moon

Jangsup Moon

Rapid bacterial identification from clinical samples using nanopore sequencing

Michael Bartsch

Michael Bartsch

Real-time selective sequencing with RUBRIC

Lightning talk

Nick Schurch

Redefining the Arabidopsis thaliana transcriptome with DRS sequencing

Yu XIA

Yu Xia

Resistome accumulation induced by discharge of treated domestic wastewater - an overlooked aspect of modern wastewater treatment

Sally James

Sally James

Sequencing everything with PromethION

Hayley Wilson

Hayley Wilson

Shaking up the short reads - using MinION sequencing to enhance an outbreak investigation

Isac Lee

Isac Lee

Simultaneous methylation and chromatin accessibility profiling on breast cancer models

Lightning talk

Rainer Waldmann

Single cell transcriptome sequencing with the 10x Genomics Chromium and the MinION

Dan Turner

Dan Turner

Soup and nuts: nanopore applications

Hans Jansen

Hans Jansen

The beauty and the beast

Todd Michael

Todd Michael

The complex architecture of plant T-DNA transgene insertions

Carika Weldon

Carika Weldon

The detection of 7-deazaguanine in both RNA and DNA using MinION: progress towards studying the function of G-quadruplexes

Michael Micorescu

Michael Micorescu

Tombo: detection of non-standard nucleotides using raw nanopore signal

Bruce Walker

Bruce Walker

Tracking movement and evolution of antibiotic resistance plasmids in a hospital over a decade

Beth Flint and Stephen Inglis

Beth Flint and Stephen Inglis

TractION LIMS

Rob James

Rob James

Understanding transmission dynamics of TB and AMR in the farmland environment

Richard Ronan

Using MinKNOW to assess the quality of your run - The Duty Time Plot

Ben Temperton

Ben Temperton

VirION: Towards long-read viral metagenomics