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Lightning talk

Detection of Unnatural Bases Using Raw Nanopore Sequencing Data

Markus Haak

Luke Meredith

Assessing the prevalence and sequence diversity of Hepatitis B Virus in Sierra Leone with MinION

Luke Meredith

Lukasz Krych

Bacterial species level identification and strain level differentiation using repetitive extragenic palindromic based amplicon sequencing with Oxford Nanopore Technology

Lukasz Krych

Carika Weldon

Carika Weldon

Polling panel speaker

Timothy Gilpatrick

Cas9 targeted enrichment for nanopore profiling of methylation at known cancer drivers

Timothy Gilpatrick

Laura Boykin, Joseph Ndunguru &Titus Alicai

Cassava Virus Action Project

Laura Boykin, Joseph Ndunguru & Titus Alicai

Lachlan Coin

Chiron basecaller

Lachlan Coin

Cecilia Yeung with Olga Sala-Torra

Clinical applications for real-time sequencing in Leukaemia

Cecilia Yeung with Olga Sala-Torra

Clive Brown

Clive Brown

Oxford Nanopore Technical Update

Alba Sanchis-Juan

Complex structural variants resolved by short-read and long-read whole genome sequencing in Mendelian disorders

Alba Sanchis-Juan

Quentin Carradec

Coral holobionte species identification onboard Tara with MinION sequencing of multiple barcodes.

Quentin Carradec

Jean-Marc Aury

De novo sequencing and assembly of plant genomes using nanopore long reads

Jean-Marc Aury

Kai Wang

Detecting DNA modifications and structural variants from nanopore long-read sequencing data

Kai Wang

Adam Burns

Detection of clinically relevant molecular alterations in CLL by nanopore sequencing

Adam Burns

Christos Proukakis

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

Christos Proukakis

Blake Hanson

Determining novel antimicrobial resistance mechanisms with Oxford Nanopore long-read sequencing data

Blake Hanson

Devon O'Rourke

Devon O'Rourke

Polling Panel Plenary

Miranda Pitt

Evaluating the extensively drug-resistant Klebsiella pneumoniae resistome via MinION direct RNA sequencing

Miranda Pitt

Amy Gargis

Evaluation of nanopore sequencing for bacterial biothreat pathogens

Amy Gargis

Danny Miller

Genome assembly in Drosophila using nanopore

Danny Miller

Alex Dainis

Haplotyping of key cardiac disease genes using long-read sequencing

Alex Dainis

Lightning talk

High Coverage, Ultra-long Read Sequencing

Jennifer Idol

Aleida Homme de Vos van Steenwijk

How MinION sequencing is helping us solve real-life environmental biotechnology issues

Aleida Homme de Vos van Steenwijk

Lightning talk

Human genome sequencing on PromethION

Wouter De Coster

Arne De Roeck

Human genome sequencing on PromethION to investigate tandem repeats in dementia

Arne De Roeck

Chris Vollmers

Improving MinION read accuracy to enable the high-throughput analysis of single cell transcriptomes.

Chris Vollmers

Lightning talk

Insights into vancomycin-resistant enterococci outbreaks through short- and long-read sequencing

Natacha Couto

Matthew Links

Interactive exploration of base calls in nanopore data

Matthew Links

Jennifer Gardy

Jennifer Gardy

Polling panel speaker

Richard Finkers

Know your onion - the impact of long reads on large genomes

Richard Finkers

Antony Bolger

LOGAN: Lossless graph-based analysis of NGS datasets

Antony Bolger

Niranjan Nagarajan

Making infection control in hospitals smarter using nanopore sequencing

Niranjan Nagarajan

Jeroen de Ridder

Mapping multi-contact chromatin interactions on the MinION

Jeroen de Ridder

Matt Loose

Matt Loose

Polling Panel Plenary

Nathan Roach

Measuring the transcriptome of the C. elegans lifecycle using direct RNA sequencing

Nathan Roach

Liana Kafetzopoulou

Metagenomic nanopore sequencing: RNA viruses from lab to field

Liana Kafetzopoulou

Reindert Nijland

MinION in the marine environment: from identifying tetrodotoxin producers to tracing sharks and rays using eDNA

Reindert Nijland

Peter Meister

Multi-contact chromosome conformation capture using nanopore sequencing in nematodes

Peter Meister

Graham Taylor

Nanopore sequencing in clinical diagnostics

Graham Taylor

Guillaume Croville

Nanopore sequencing in veterinary virology: from clinical sample to whole genome

Guillaume Croville

Wigard Kloosterman

Nanopore sequencing of cancer genomes

Wigard Kloosterman

Lightning talk

Nanopore sequencing of full-length 16S rRNA gene in low-biomass samples: subclinical mastitis in water buffalo

Olga Francino

Lightning talk

Nanopore sequencing permits de novo assembly of repetitive microbial genomes

Stefanos Siozios

Lightning talk

Nanopore sequencing-based diagnostics of bacteremia in septic patients

Kai Sohn

Jose Espejo Valle-Inclan

NanoSV

Jose Espejo Valle-Inclan

Angela Brooks

Native RNA sequencing of human polyadenylated transcripts

Angela Brooks (Nanopore RNA Consortium)

Carl-Johan Rubin

On-site nanopore sequencing of Darwin's finch genomes in the Galapagos

Carl-Johan Rubin

Lightning talk

Phasing regulatory SNVs to their regulating transcript regions in cancers by using MinION

Yutaka Suzuki

Bruce Walker

Pilon

Bruce Walker

Simon Grandjean Lapierre & Niaina Rakotosamimanana

Point of care Mycobacterium tuberculosis whole genome sequencing in remote rural Madagascar

Simon Grandjean Lapierre & Niaina Rakotosamimanana

Alexander Wittenberg

PromethION sequencing of complex plant genomes

Alexander Wittenberg

Andreas Hauser

PromethION: an alpha machine in production

Andreas Hauser

Helmut Blum

PromethION: Unleash the power of nanopore sequencing

Helmut Blum

Jangsup Moon

Rapid bacterial identification from clinical samples using nanopore sequencing

Jangsup Moon

Michael Bartsch

Real-time selective sequencing with RUBRIC

Michael Bartsch

Lightning talk

Redefining the Arabidopsis thaliana transcriptome with DRS sequencing

Nick Schurch

Yu XIA

Resistome accumulation induced by discharge of treated domestic wastewater - an overlooked aspect of modern wastewater treatment

Yu Xia

Sally James

Sequencing everything with PromethION

Sally James

Hayley Wilson

Shaking up the short reads - using MinION sequencing to enhance an outbreak investigation

Hayley Wilson

Isac Lee

Simultaneous methylation and chromatin accessibility profiling on breast cancer models

Isac Lee

Lightning talk

Single cell transcriptome sequencing with the 10x Genomics Chromium and the MinION

Rainer Waldmann

Dan Turner

Soup and nuts: nanopore applications

Dan Turner

Hans Jansen

The beauty and the beast

Hans Jansen

Todd Michael

The complex architecture of plant T-DNA transgene insertions

Todd Michael

Carika Weldon

The detection of 7-deazaguanine in both RNA and DNA using MinION: progress towards studying the function of G-quadruplexes

Carika Weldon

Michael Micorescu

Tombo: detection of non-standard nucleotides using raw nanopore signal

Michael Micorescu

Bruce Walker

Tracking movement and evolution of antibiotic resistance plasmids in a hospital over a decade

Bruce Walker

Beth Flint and Stephen Inglis

TractION LIMS

Beth Flint and Stephen Inglis

Rob James

Understanding transmission dynamics of TB and AMR in the farmland environment

Rob James

Using MinKNOW to assess the quality of your run - The Duty Time Plot

Richard Ronan

Ben Temperton

VirION: Towards long-read viral metagenomics

Ben Temperton